Computational Neuroscience
The human brain is a complex network, consisting of functionally interconnected regions whose coordinated effort gives rise to different functions. Understanding what these regions are, how they interact, and how this interaction forms a wide range of behavior has long been an essential question for human neuroscience. Neuroimaging techniques have provided a unique opportunity to tackle this question in a data-driven way. Advances in neuroimaging techniques such as functional Magnetic Resonance Imaging (fMRI), have allowed us to approximately measure the neural activity in the brain. However, fMRI data are not only massive in size but also spatially and temporally complex. One of the research directions in our group is to develop advanced machine learning techniques to study brain function and its link to behavior.
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Medical Image Analysis 2023 Cross Atlas Remapping via Optimal Transport (CAROT): Creating connectomes for different atlases when raw data is not available Javid Dadashkarimi, Amin Karbasi, Qinghao Liang, Matthew Rosenblatt, Stephanie Noble, Maya Foster, Raimundo Rodriguez, Brendan Adkinson, Jean Ye, Huili Sun, Chris Camp, Michael Farruggia, Link Tejavibulya, Wei Dai, Rongtao Jiang, Angeliki Pollatou, Dustin Scheinost -
arxiv 2022 Cross Atlas Remapping via Optimal Transport (CAROT): Creating connectomes for any atlas when raw data is not available Javid Dadashkarimi, Amin Karbasi, and Dustin Scheinost -
GRAIL 2022 Transforming Connectomes to “Any” Parcellation via Graph Matching | Best Paper Award Qinghao Liang, Javid Dadashkarimi, Wei Dai, Amin Karbasi, Joseph Chang, Harrison H. Zhou, Dustin Scheinost -
MICCAI 2022 Combining multiple atlases to estimate data-driven mappings between functional connectomes using optimal transport Javid Dadashkarimi, Amin Karbasi, and Dustin Scheinost -
MICCAI 2021 Data-driven mapping between functional connectomes using optimal transport Javid Dadashkarimi, Amin Karbasi, and Dustin Scheinost -
NeuroImage 2020 Individualized functional networks reconfigure with cognitive state M. Salehi, A. Karbasi, D. S. Barron, D. Scheinost, R. T. Constable -
NeuroImage 2020 There is no single functional atlas even for a single individual: Functional parcel definitions change with task | Facebook Main Award M. Salehi , A. S. Greene , A. Karbasi , X. Shen , D. Scheinost, and R. T. Constable -
PhD Thesis 2019 Individualized and Task-Specific Functional Brain Mapping | Ivy 3-Minute Thesis Competition Award Mehraveh Salehi, Todd Constable , and Amin Karbasi -
Journal of Computational Neuroscience 2018 An exemplar-based approach to individualized parcellation reveals the need for sex specific functional networks. Mehraveh Salehi, Amin Karbasi, Xilin Shen, Dustin Scheinost, R. Todd Constable: -
Journal of Computational Neuroscience 2018 Learning neural connectivity from firing activity: efficient algorithms with provable guarantees on topology. Amin Karbasi, Amir Hesam Salavati, Martin Vetterli -
arXiv 2014 Convolutional Neural Associative Memories: Massive Capacity with Noise Tolerance. Amin Karbasi, Amir Hesam Salavati, Amin Shokrollahi -
Neural Computation 2014 Noise Facilitation in Associative Memories of Exponential Capacity | IEEE Data Storage Best Student Paper Award Amin Karbasi, Amir Hesam Salavati, Amin Shokrollahi, Lav R. Varshney: -
ICML 2013 Iterative Learning and Denoising in Convolutional Neural Associative Memories. Amin Karbasi, Amir Hesam Salavati, Amin Shokrollahi -
ITW 2013 Coupled neural associative memories. Amin Karbasi, Amir Hesam Salavati, Amin Shokrollahi -
NeurIPS 2013 Noise-Enhanced Associative Memories Amin Karbasi, Amir Hesam Salavati, Amin Shokrollahi, and Lav R. Varshney
